-----------------------
Start of variable list:
-----------------------
Sample_ID:
G168_G169_M19
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/G168_G169/G168/TCPOBOP_frStrand_Env/TCPOBOP
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/G168_G169/G168/TCPOBOP_frStrand_Env/TCPOBOP/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Mar 11 21:11:04 EDT 2019
Running on node : scc-ka2
Current directory : /restricted/projectnb/waxmanlab/kkarri/G168_G169/G168/TCPOBOP_frStrand_Env/TCPOBOP/Scripts/03_Read_Length
Current job ID : 3518684
Current job name : Step_03_G168_G169_M19
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/3518684.1.linga

Loading required modules...


List files in scratch directory:

total 4.6G
drwx------   2 kkarri waxmanlab 4.0K Mar 11 21:11 .
drwxrwxrwt. 54 root   root      116K Mar 11 21:11 ..
-rw-r--r--   1 kkarri waxmanlab 2.2G Mar 11 21:11 G168_G169_M19_R1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 2.4G Mar 11 21:11 G168_G169_M19_R2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing G168_G169_M19_R1.fastq


Processing G168_G169_M19_R2.fastq


Ending Read Length


List files in scratch

total 18G
drwx------   2 kkarri waxmanlab 4.0K Mar 11 21:15 .
drwxrwxrwt. 51 root   root      116K Mar 11 21:16 ..
-rw-r--r--   1 kkarri waxmanlab 9.0G Mar 11 21:11 G168_G169_M19_R1.fastq
-rw-r--r--   1 kkarri waxmanlab 9.0G Mar 11 21:11 G168_G169_M19_R2.fastq
==========================================================
Finished on : Mon Mar 11 21:17:56 EDT 2019
0 hours, 6 minutes and 52 seconds elapsed.
==========================================================