-----------------------
Start of variable list:
-----------------------
Sample_ID:
NASH_PEG2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE126204
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE126204/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 17:13:56 EDT 2019
Running on node : scc-ka4
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE126204/Scripts/03_Read_Length
Current job ID : 7056647
Current job name : Step_03_NASH_PEG2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7056647.1.linga

Loading required modules...


List files in scratch directory:

total 2.0G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:18 .
drwxrwxrwt. 12 root     root      4.0K Jun 24 17:14 ..
-rw-r--r--   1 varsha97 waxmanlab 954M Jun 24 17:17 SRR8543823_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 1.1G Jun 24 17:19 SRR8543823_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8543823_1.fastq


Processing SRR8543823_2.fastq


Ending Read Length


List files in scratch

total 8.6G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:20 .
drwxrwxrwt. 11 root     root      4.0K Jun 24 17:20 ..
-rw-r--r--   1 varsha97 waxmanlab 4.3G Jun 24 17:17 SRR8543823_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 4.3G Jun 24 17:19 SRR8543823_2.fastq
==========================================================
Finished on : Mon Jun 24 17:22:11 EDT 2019
0 hours, 8 minutes and 19 seconds elapsed.
==========================================================