-----------------------
Start of variable list:
-----------------------
Sample_ID:
CHOW2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE126204
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE126204/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 17:19:14 EDT 2019
Running on node : scc-ka8
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE126204/Scripts/03_Read_Length
Current job ID : 7056644
Current job name : Step_03_CHOW2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7056644.1.linga

Loading required modules...


List files in scratch directory:

total 2.2G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:20 .
drwxrwxrwt. 14 root     root      4.0K Jun 24 17:19 ..
-rw-r--r--   1 varsha97 waxmanlab 1.1G Jun 24 17:20 SRR8543820_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 1.2G Jun 24 17:22 SRR8543820_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8543820_1.fastq


Processing SRR8543820_2.fastq


Ending Read Length


List files in scratch

total 9.2G
drwx------  2 varsha97 waxmanlab 4.0K Jun 24 17:23 .
drwxrwxrwt. 9 root     root      4.0K Jun 24 17:25 ..
-rw-r--r--  1 varsha97 waxmanlab 4.6G Jun 24 17:20 SRR8543820_1.fastq
-rw-r--r--  1 varsha97 waxmanlab 4.6G Jun 24 17:22 SRR8543820_2.fastq
==========================================================
Finished on : Mon Jun 24 17:25:19 EDT 2019
0 hours, 6 minutes and 5 seconds elapsed.
==========================================================