Left reads: Input : 27554939 Mapped : 26085214 (94.7% of input) of these: 2528694 ( 9.7%) have multiple alignments (53302 have >20) Right reads: Input : 27554939 Mapped : 25661377 (93.1% of input) of these: 2519560 ( 9.8%) have multiple alignments (53276 have >20) 93.9% overall read mapping rate. Aligned pairs: 25209937 of these: 2458334 ( 9.8%) have multiple alignments 241768 ( 1.0%) are discordant alignments 90.6% concordant pair alignment rate.