segment_juncs v2.1.1 (ecf7617)
---------------------------
[samopen] SAM header is present: 22 sequences.
Loading reference sequences...
	Loading chr10... done (129993255 bases).
	Loading chr11... done (121843856 bases).
	Loading chr12... done (121257530 bases).
	Loading chr13... done (120284312 bases).
	Loading chr14... done (125194864 bases).
	Loading chr15... done (103494974 bases).
	Loading chr16... done (98319150 bases).
	Loading chr17... done (95272651 bases).
	Loading chr18... done (90772031 bases).
	Loading chr19... done (61342430 bases).
	Loading chr1... done (197195432 bases).
	Loading chr2... done (181748087 bases).
	Loading chr3... done (159599783 bases).
	Loading chr4... done (155630120 bases).
	Loading chr5... done (152537259 bases).
	Loading chr6... done (149517037 bases).
	Loading chr7... done (152524553 bases).
	Loading chr8... done (131738871 bases).
	Loading chr9... done (124076172 bases).
	Loading chrM... done (16299 bases).
	Loading chrX... done (166650296 bases).
	Loading chrY... done (15902555 bases).
>> Performing segment-search:
Loading left segment hits... done.
Loading right segment hits...done.
	found 27340 potential split-segment junctions
	found 2835 potential small deletions
	found 4156 potential small insertions
Reported 27340 total potential splices
Reporting 2835 potential deletions...
Reporting 4156 potential insertions...
Reporting potential fusions...