-----------------------
Start of variable list:
-----------------------
Sample_ID:
GFP_1371
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE125237
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE125237/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 17:27:47 EDT 2019
Running on node : scc-ka5
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE125237/Scripts/03_Read_Length
Current job ID : 7056641
Current job name : Step_03_GFP_1371
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7056641.1.linga

Loading required modules...


List files in scratch directory:

total 2.1G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:28 .
drwxrwxrwt. 16 root     root      4.0K Jun 24 17:10 ..
-rw-r--r--   1 varsha97 waxmanlab 1.1G Jun 24 17:28 SRR8450747_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 1.1G Jun 24 17:28 SRR8450747_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8450747_1.fastq


Processing SRR8450747_2.fastq


Ending Read Length


List files in scratch

total 8.5G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:32 .
drwxrwxrwt. 18 root     root      4.0K Jun 24 17:34 ..
-rw-r--r--   1 varsha97 waxmanlab 4.3G Jun 24 17:28 SRR8450747_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 4.3G Jun 24 17:28 SRR8450747_2.fastq
==========================================================
Finished on : Mon Jun 24 17:36:40 EDT 2019
0 hours, 9 minutes and 3 seconds elapsed.
==========================================================