Left reads: Input : 17500723 Mapped : 16766971 (95.8% of input) of these: 2458358 (14.7%) have multiple alignments (504398 have >20) Right reads: Input : 17500723 Mapped : 16608273 (94.9% of input) of these: 2454394 (14.8%) have multiple alignments (504484 have >20) 95.4% overall read mapping rate. Aligned pairs: 16203204 of these: 2375657 (14.7%) have multiple alignments 591535 ( 3.7%) are discordant alignments 89.2% concordant pair alignment rate.