41509852 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 41509852 + 0 mapped (100.00%:-nan%) 41509852 + 0 paired in sequencing 20869453 + 0 read1 20640399 + 0 read2 16968300 + 0 properly paired (40.88%:-nan%) 40069400 + 0 with itself and mate mapped 1440452 + 0 singletons (3.47%:-nan%) 1982836 + 0 with mate mapped to a different chr 814488 + 0 with mate mapped to a different chr (mapQ>=5)