Left reads: Input : 18559768 Mapped : 17378860 (93.6% of input) of these: 2105299 (12.1%) have multiple alignments (261554 have >20) Right reads: Input : 18559768 Mapped : 17305884 (93.2% of input) of these: 2138438 (12.4%) have multiple alignments (261507 have >20) 93.4% overall read mapping rate. Aligned pairs: 16677538 of these: 2007961 (12.0%) have multiple alignments 971961 ( 5.8%) are discordant alignments 84.6% concordant pair alignment rate.