Left reads: Input : 57404449 Mapped : 21800267 (38.0% of input) of these: 804035 ( 3.7%) have multiple alignments (12191 have >20) Right reads: Input : 57404449 Mapped : 19310270 (33.6% of input) of these: 720606 ( 3.7%) have multiple alignments (12190 have >20) 35.8% overall read mapping rate. Aligned pairs: 16784668 of these: 478399 ( 2.9%) have multiple alignments 556981 ( 3.3%) are discordant alignments 28.3% concordant pair alignment rate.