Left reads: Input : 64543935 Mapped : 30710240 (47.6% of input) of these: 943775 ( 3.1%) have multiple alignments (7540 have >20) Right reads: Input : 64543935 Mapped : 27614963 (42.8% of input) of these: 859521 ( 3.1%) have multiple alignments (7540 have >20) 45.2% overall read mapping rate. Aligned pairs: 24717458 of these: 602030 ( 2.4%) have multiple alignments 649188 ( 2.6%) are discordant alignments 37.3% concordant pair alignment rate.