Left reads: Input : 55448455 Mapped : 22429362 (40.5% of input) of these: 617377 ( 2.8%) have multiple alignments (5580 have >20) Right reads: Input : 55448455 Mapped : 20015629 (36.1% of input) of these: 561338 ( 2.8%) have multiple alignments (5580 have >20) 38.3% overall read mapping rate. Aligned pairs: 17329110 of these: 332964 ( 1.9%) have multiple alignments 620653 ( 3.6%) are discordant alignments 30.1% concordant pair alignment rate.