Left reads: Input : 86237358 Mapped : 45860001 (53.2% of input) of these: 2604051 ( 5.7%) have multiple alignments (235043 have >20) Right reads: Input : 86237358 Mapped : 40922213 (47.5% of input) of these: 2466151 ( 6.0%) have multiple alignments (209414 have >20) 50.3% overall read mapping rate. Aligned pairs: 38733848 of these: 2075500 ( 5.4%) have multiple alignments 136024 ( 0.4%) are discordant alignments 44.8% concordant pair alignment rate.