5563306 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 5563306 + 0 mapped (100.00%:-nan%) 5563306 + 0 paired in sequencing 2550173 + 0 read1 3013133 + 0 read2 2762680 + 0 properly paired (49.66%:-nan%) 3259804 + 0 with itself and mate mapped 2303502 + 0 singletons (41.41%:-nan%) 812868 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)