Left reads: Input : 71519666 Mapped : 31428308 (43.9% of input) of these: 1030004 ( 3.3%) have multiple alignments (24344 have >20) Right reads: Input : 71519666 Mapped : 28249885 (39.5% of input) of these: 981809 ( 3.5%) have multiple alignments (24343 have >20) 41.7% overall read mapping rate. Aligned pairs: 25570125 of these: 707298 ( 2.8%) have multiple alignments 469703 ( 1.8%) are discordant alignments 35.1% concordant pair alignment rate.