Left reads: Input : 74128164 Mapped : 35309500 (47.6% of input) of these: 932360 ( 2.6%) have multiple alignments (9865 have >20) Right reads: Input : 74128164 Mapped : 31811134 (42.9% of input) of these: 845885 ( 2.7%) have multiple alignments (9862 have >20) 45.3% overall read mapping rate. Aligned pairs: 27962243 of these: 539857 ( 1.9%) have multiple alignments 838219 ( 3.0%) are discordant alignments 36.6% concordant pair alignment rate.