Left reads: Input : 51667409 Mapped : 28483749 (55.1% of input) of these: 1855606 ( 6.5%) have multiple alignments (300579 have >20) Right reads: Input : 51667409 Mapped : 25948243 (50.2% of input) of these: 1686415 ( 6.5%) have multiple alignments (273647 have >20) 52.7% overall read mapping rate. Aligned pairs: 24007639 of these: 1508639 ( 6.3%) have multiple alignments 333355 ( 1.4%) are discordant alignments 45.8% concordant pair alignment rate.