-----------------------
Start of variable list:
-----------------------
Sample_ID:
O-O3
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123117
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123117/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 17:07:08 EDT 2019
Running on node : scc-ka8
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123117/Scripts/03_Read_Length
Current job ID : 7056619
Current job name : Step_03_O-O3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7056619.1.linga

Loading required modules...


List files in scratch directory:

total 4.2G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:07 .
drwxrwxrwt. 13 root     root      4.0K Jun 24 17:07 ..
-rw-r--r--   1 varsha97 waxmanlab 2.0G Jun 24 17:07 SRR8261625_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 2.2G Jun 24 17:07 SRR8261625_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8261625_1.fastq


Processing SRR8261625_2.fastq


Ending Read Length


List files in scratch

total 19G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 17:12 .
drwxrwxrwt. 16 root     root      4.0K Jun 24 17:10 ..
-rw-r--r--   1 varsha97 waxmanlab 9.2G Jun 24 17:07 SRR8261625_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 9.2G Jun 24 17:07 SRR8261625_2.fastq
==========================================================
Finished on : Mon Jun 24 17:18:59 EDT 2019
0 hours, 12 minutes and 0 seconds elapsed.
==========================================================