Left reads: Input : 31965644 Mapped : 16889115 (52.8% of input) of these: 1265644 ( 7.5%) have multiple alignments (13528 have >20) Right reads: Input : 31965644 Mapped : 15860603 (49.6% of input) of these: 1186868 ( 7.5%) have multiple alignments (13500 have >20) 51.2% overall read mapping rate. Aligned pairs: 15400248 of these: 1151871 ( 7.5%) have multiple alignments 55543 ( 0.4%) are discordant alignments 48.0% concordant pair alignment rate.