Left reads: Input : 34586527 Mapped : 17413736 (50.3% of input) of these: 1389079 ( 8.0%) have multiple alignments (16897 have >20) Right reads: Input : 34586527 Mapped : 16334858 (47.2% of input) of these: 1300738 ( 8.0%) have multiple alignments (16901 have >20) 48.8% overall read mapping rate. Aligned pairs: 15861777 of these: 1258149 ( 7.9%) have multiple alignments 50698 ( 0.3%) are discordant alignments 45.7% concordant pair alignment rate.