Left reads: Input : 31878952 Mapped : 16523547 (51.8% of input) of these: 1160319 ( 7.0%) have multiple alignments (12798 have >20) Right reads: Input : 31878952 Mapped : 15502663 (48.6% of input) of these: 1088908 ( 7.0%) have multiple alignments (12795 have >20) 50.2% overall read mapping rate. Aligned pairs: 15053392 of these: 1055126 ( 7.0%) have multiple alignments 58592 ( 0.4%) are discordant alignments 47.0% concordant pair alignment rate.