Left reads: Input : 28444252 Mapped : 15285142 (53.7% of input) of these: 993331 ( 6.5%) have multiple alignments (10048 have >20) Right reads: Input : 28444252 Mapped : 14280794 (50.2% of input) of these: 928645 ( 6.5%) have multiple alignments (10062 have >20) 52.0% overall read mapping rate. Aligned pairs: 13860837 of these: 900660 ( 6.5%) have multiple alignments 57459 ( 0.4%) are discordant alignments 48.5% concordant pair alignment rate.