Left reads: Input : 29185546 Mapped : 15739149 (53.9% of input) of these: 1016167 ( 6.5%) have multiple alignments (11181 have >20) Right reads: Input : 29185546 Mapped : 14752206 (50.5% of input) of these: 952328 ( 6.5%) have multiple alignments (11168 have >20) 52.2% overall read mapping rate. Aligned pairs: 14333798 of these: 925916 ( 6.5%) have multiple alignments 56966 ( 0.4%) are discordant alignments 48.9% concordant pair alignment rate.