Left reads: Input : 29824183 Mapped : 15913858 (53.4% of input) of these: 1081593 ( 6.8%) have multiple alignments (11687 have >20) Right reads: Input : 29824183 Mapped : 14872600 (49.9% of input) of these: 1010376 ( 6.8%) have multiple alignments (11680 have >20) 51.6% overall read mapping rate. Aligned pairs: 14427348 of these: 980701 ( 6.8%) have multiple alignments 62508 ( 0.4%) are discordant alignments 48.2% concordant pair alignment rate.