Left reads: Input : 28975762 Mapped : 15684810 (54.1% of input) of these: 1172416 ( 7.5%) have multiple alignments (11935 have >20) Right reads: Input : 28975762 Mapped : 14652977 (50.6% of input) of these: 1094808 ( 7.5%) have multiple alignments (11907 have >20) 52.4% overall read mapping rate. Aligned pairs: 14212646 of these: 1061744 ( 7.5%) have multiple alignments 64951 ( 0.5%) are discordant alignments 48.8% concordant pair alignment rate.