Left reads: Input : 64002939 Mapped : 40814930 (63.8% of input) of these: 3477797 ( 8.5%) have multiple alignments (44059 have >20) Right reads: Input : 64002939 Mapped : 39437276 (61.6% of input) of these: 3361985 ( 8.5%) have multiple alignments (44148 have >20) 62.7% overall read mapping rate. Aligned pairs: 38187080 of these: 3232946 ( 8.5%) have multiple alignments 119847 ( 0.3%) are discordant alignments 59.5% concordant pair alignment rate.