Left reads: Input : 62886940 Mapped : 40653364 (64.6% of input) of these: 3648904 ( 9.0%) have multiple alignments (85291 have >20) Right reads: Input : 62886940 Mapped : 39227420 (62.4% of input) of these: 3524504 ( 9.0%) have multiple alignments (85362 have >20) 63.5% overall read mapping rate. Aligned pairs: 37991924 of these: 3398404 ( 8.9%) have multiple alignments 145453 ( 0.4%) are discordant alignments 60.2% concordant pair alignment rate.