Left reads: Input : 80983403 Mapped : 50838991 (62.8% of input) of these: 4096864 ( 8.1%) have multiple alignments (232505 have >20) Right reads: Input : 80983403 Mapped : 48981240 (60.5% of input) of these: 3951003 ( 8.1%) have multiple alignments (228236 have >20) 61.6% overall read mapping rate. Aligned pairs: 47455371 of these: 3814943 ( 8.0%) have multiple alignments 103205 ( 0.2%) are discordant alignments 58.5% concordant pair alignment rate.