40533209 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 40533209 + 0 mapped (100.00%:-nan%) 40533209 + 0 paired in sequencing 20784211 + 0 read1 19748998 + 0 read2 36157912 + 0 properly paired (89.21%:-nan%) 37753976 + 0 with itself and mate mapped 2779233 + 0 singletons (6.86%:-nan%) 539122 + 0 with mate mapped to a different chr 367742 + 0 with mate mapped to a different chr (mapQ>=5)