-----------------------
Start of variable list:
-----------------------
Sample_ID:
Yg-hMANF-HTV4
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Jun 28 12:26:55 EDT 2019
Running on node : scc-kb2
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115/Scripts/03_Read_Length
Current job ID : 7287090
Current job name : Step_03_Yg-hMANF-HTV4
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7287090.1.linga

Loading required modules...


List files in scratch directory:

total 4.0G
drwx------   2 varsha97 waxmanlab 4.0K Jun 28 12:32 .
drwxrwxrwt. 23 root     root      4.0K Jun 28 12:34 ..
-rw-r--r--   1 varsha97 waxmanlab 1.9G Jun 28 12:32 SRR8261776_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 2.1G Jun 28 12:36 SRR8261776_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8261776_1.fastq


Processing SRR8261776_2.fastq


Ending Read Length


List files in scratch

total 18G
drwx------   2 varsha97 waxmanlab 4.0K Jun 28 12:44 .
drwxrwxrwt. 18 root     root      4.0K Jun 28 12:44 ..
-rw-r--r--   1 varsha97 waxmanlab 8.7G Jun 28 12:32 SRR8261776_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 8.7G Jun 28 12:36 SRR8261776_2.fastq
==========================================================
Finished on : Fri Jun 28 12:46:55 EDT 2019
0 hours, 20 minutes and 0 seconds elapsed.
==========================================================