-----------------------
Start of variable list:
-----------------------
Sample_ID:
Yg-hMANF-HTV1
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Jun 28 12:26:54 EDT 2019
Running on node : scc-kb2
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115/Scripts/03_Read_Length
Current job ID : 7287087
Current job name : Step_03_Yg-hMANF-HTV1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7287087.1.linga

Loading required modules...


List files in scratch directory:

total 4.3G
drwx------   2 varsha97 waxmanlab 4.0K Jun 28 12:32 .
drwxrwxrwt. 23 root     root      4.0K Jun 28 12:34 ..
-rw-r--r--   1 varsha97 waxmanlab 2.0G Jun 28 12:32 SRR8261773_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 2.3G Jun 28 12:36 SRR8261773_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8261773_1.fastq


Processing SRR8261773_2.fastq


Ending Read Length


List files in scratch

total 19G
drwx------   2 varsha97 waxmanlab 4.0K Jun 28 12:46 .
drwxrwxrwt. 14 root     root      4.0K Jun 28 12:48 ..
-rw-r--r--   1 varsha97 waxmanlab 9.4G Jun 28 12:32 SRR8261773_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 9.4G Jun 28 12:36 SRR8261773_2.fastq
==========================================================
Finished on : Fri Jun 28 12:49:01 EDT 2019
0 hours, 22 minutes and 7 seconds elapsed.
==========================================================