-----------------------
Start of variable list:
-----------------------
Sample_ID:
Old-hMANF-HTV1
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Jun 28 12:26:54 EDT 2019
Running on node : scc-kb2
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE123115/Scripts/03_Read_Length
Current job ID : 7287095
Current job name : Step_03_Old-hMANF-HTV1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7287095.1.linga

Loading required modules...


List files in scratch directory:

total 3.6G
drwx------   2 varsha97 waxmanlab 4.0K Jun 28 12:32 .
drwxrwxrwt. 23 root     root      4.0K Jun 28 12:34 ..
-rw-r--r--   1 varsha97 waxmanlab 1.7G Jun 28 12:32 SRR8261781_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 1.9G Jun 28 12:35 SRR8261781_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8261781_1.fastq


Processing SRR8261781_2.fastq


Ending Read Length


List files in scratch

total 15G
drwx------   2 varsha97 waxmanlab 4.0K Jun 28 12:41 .
drwxrwxrwt. 21 root     root      4.0K Jun 28 12:42 ..
-rw-r--r--   1 varsha97 waxmanlab 7.3G Jun 28 12:32 SRR8261781_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 7.3G Jun 28 12:35 SRR8261781_2.fastq
==========================================================
Finished on : Fri Jun 28 12:43:20 EDT 2019
0 hours, 16 minutes and 26 seconds elapsed.
==========================================================