-----------------------
Start of variable list:
-----------------------
Sample_ID:
6_Liver_High_3h
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Jul  3 14:03:54 EDT 2019
Running on node : scc-kb6
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/03_Read_Length
Current job ID : 7502575
Current job name : Step_03_6_Liver_High_3h
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7502575.1.linga

Loading required modules...


List files in scratch directory:

total 461M
drwx------   2 varsha97 waxmanlab 4.0K Jul  3 14:05 .
drwxrwxrwt. 14 root     root      4.0K Jul  3 14:03 ..
-rw-r--r--   1 varsha97 waxmanlab 208M Jul  3 14:05 SRR7585273_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 254M Jul  3 14:06 SRR7585273_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR7585273_1.fastq


Processing SRR7585273_2.fastq


Ending Read Length


List files in scratch

total 1.9G
drwx------   2 varsha97 waxmanlab 4.0K Jul  3 14:07 .
drwxrwxrwt. 13 root     root      4.0K Jul  3 14:07 ..
-rw-r--r--   1 varsha97 waxmanlab 940M Jul  3 14:05 SRR7585273_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 940M Jul  3 14:06 SRR7585273_2.fastq
==========================================================
Finished on : Wed Jul  3 14:07:54 EDT 2019
0 hours, 4 minutes and 0 seconds elapsed.
==========================================================