-----------------------
Start of variable list:
-----------------------
Sample_ID:
6_Liver_Basal_3h
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Jul  3 14:03:54 EDT 2019
Running on node : scc-kb1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/03_Read_Length
Current job ID : 7502573
Current job name : Step_03_6_Liver_Basal_3h
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7502573.1.linga

Loading required modules...


List files in scratch directory:

total 666M
drwx------   2 varsha97 waxmanlab 4.0K Jul  3 14:07 .
drwxrwxrwt. 11 root     root      4.0K Jul  3 14:03 ..
-rw-r--r--   1 varsha97 waxmanlab 318M Jul  3 14:06 SRR7585271_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 348M Jul  3 14:07 SRR7585271_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR7585271_1.fastq


Processing SRR7585271_2.fastq


Ending Read Length


List files in scratch

total 2.8G
drwx------  2 varsha97 waxmanlab 4.0K Jul  3 14:07 .
drwxrwxrwt. 7 root     root      4.0K Jul  3 14:08 ..
-rw-r--r--  1 varsha97 waxmanlab 1.4G Jul  3 14:06 SRR7585271_1.fastq
-rw-r--r--  1 varsha97 waxmanlab 1.4G Jul  3 14:07 SRR7585271_2.fastq
==========================================================
Finished on : Wed Jul  3 14:08:06 EDT 2019
0 hours, 4 minutes and 12 seconds elapsed.
==========================================================