-----------------------
Start of variable list:
-----------------------
Sample_ID:
2_Liver_Basal_3h
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Jul  3 14:03:52 EDT 2019
Running on node : scc-kb7
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/03_Read_Length
Current job ID : 7502549
Current job name : Step_03_2_Liver_Basal_3h
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7502549.1.linga

Loading required modules...


List files in scratch directory:

total 661M
drwx------   2 varsha97 waxmanlab 4.0K Jul  3 14:06 .
drwxrwxrwt. 11 root     root      4.0K Jul  3 14:03 ..
-rw-r--r--   1 varsha97 waxmanlab 298M Jul  3 14:05 SRR7585226_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 363M Jul  3 14:06 SRR7585226_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR7585226_1.fastq


Processing SRR7585226_2.fastq


Ending Read Length


List files in scratch

total 2.6G
drwx------  2 varsha97 waxmanlab 4.0K Jul  3 14:07 .
drwxrwxrwt. 9 root     root      4.0K Jul  3 14:07 ..
-rw-r--r--  1 varsha97 waxmanlab 1.3G Jul  3 14:05 SRR7585226_1.fastq
-rw-r--r--  1 varsha97 waxmanlab 1.3G Jul  3 14:06 SRR7585226_2.fastq
==========================================================
Finished on : Wed Jul  3 14:07:50 EDT 2019
0 hours, 3 minutes and 58 seconds elapsed.
==========================================================