-----------------------
Start of variable list:
-----------------------
Sample_ID:
1_Liver_High_20
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Jul  3 14:03:51 EDT 2019
Running on node : scc-tm3
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117741/Scripts/03_Read_Length
Current job ID : 7502542
Current job name : Step_03_1_Liver_High_20
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7502542.1.linga

Loading required modules...


List files in scratch directory:

total 461M
drwx------  2 varsha97 waxmanlab 4.0K Jul  3 14:04 .
drwxrwxrwt. 8 root     root      4.0K Jul  3 14:04 ..
-rw-r--r--  1 varsha97 waxmanlab 239M Jul  3 14:04 SRR7585210_1.fastq.gz
-rw-r--r--  1 varsha97 waxmanlab 222M Jul  3 14:05 SRR7585210_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR7585210_1.fastq


Processing SRR7585210_2.fastq


Ending Read Length


List files in scratch

total 1.9G
drwx------  2 varsha97 waxmanlab 4.0K Jul  3 14:05 .
drwxrwxrwt. 8 root     root      4.0K Jul  3 14:04 ..
-rw-r--r--  1 varsha97 waxmanlab 949M Jul  3 14:04 SRR7585210_1.fastq
-rw-r--r--  1 varsha97 waxmanlab 949M Jul  3 14:05 SRR7585210_2.fastq
==========================================================
Finished on : Wed Jul  3 14:06:14 EDT 2019
0 hours, 2 minutes and 23 seconds elapsed.
==========================================================