-----------------------
Start of variable list:
-----------------------
Sample_ID:
4h_Vehicle_2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117425
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117425/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed Jul 10 19:01:58 EDT 2019
Running on node : scc-kb6
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117425/Scripts/03_Read_Length
Current job ID : 7650980
Current job name : Step_03_4h_Vehicle_2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7650980.1.linga

Loading required modules...


List files in scratch directory:

total 3.2G
drwx------   2 varsha97 waxmanlab 4.0K Jul 10 19:02 .
drwxrwxrwt. 17 root     root      4.0K Jul 10 19:01 ..
-rw-r--r--   1 varsha97 waxmanlab 1.5G Jul 10 19:02 SRR7545303_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 1.8G Jul 10 19:02 SRR7545303_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR7545303_1.fastq


Processing SRR7545303_2.fastq


Ending Read Length


List files in scratch

total 14G
drwx------   2 varsha97 waxmanlab 4.0K Jul 10 19:07 .
drwxrwxrwt. 16 root     root      4.0K Jul 10 19:03 ..
-rw-r--r--   1 varsha97 waxmanlab 6.8G Jul 10 19:02 SRR7545303_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 6.8G Jul 10 19:02 SRR7545303_2.fastq
==========================================================
Finished on : Wed Jul 10 19:10:53 EDT 2019
0 hours, 8 minutes and 55 seconds elapsed.
==========================================================