-----------------------
Start of variable list:
-----------------------
Sample_ID:
N-2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117066
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117066/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 15:57:27 EDT 2019
Running on node : scc-kb4
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE117066/Scripts/03_Read_Length
Current job ID : 7055580
Current job name : Step_03_N-2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7055580.1.linga

Loading required modules...


List files in scratch directory:

total 5.1G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 16:08 .
drwxrwxrwt. 20 root     root      4.0K Jun 24 15:56 ..
-rw-r--r--   1 varsha97 waxmanlab 2.4G Jun 24 16:06 SRR7518411_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 2.7G Jun 24 16:20 SRR7518411_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR7518411_1.fastq


Processing SRR7518411_2.fastq


Ending Read Length


List files in scratch

total 20G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 16:27 .
drwxrwxrwt. 15 root     root      4.0K Jun 24 16:31 ..
-rw-r--r--   1 varsha97 waxmanlab 9.8G Jun 24 16:06 SRR7518411_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 9.8G Jun 24 16:20 SRR7518411_2.fastq
==========================================================
Finished on : Mon Jun 24 16:32:17 EDT 2019
0 hours, 35 minutes and 3 seconds elapsed.
==========================================================