-----------------------
Start of variable list:
-----------------------
Sample_ID:
IC57-1164
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE111828
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE111828/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 16:23:33 EDT 2019
Running on node : scc-kb7
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE111828/Scripts/03_Read_Length
Current job ID : 7056251
Current job name : Step_03_IC57-1164
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7056251.1.linga

Loading required modules...


List files in scratch directory:

total 1.1G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 16:27 .
drwxrwxrwt. 19 root     root      4.0K Jun 24 15:56 ..
-rw-r--r--   1 varsha97 waxmanlab 529M Jun 24 16:27 SRR6833768_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 562M Jun 24 16:30 SRR6833768_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6833768_1.fastq


Processing SRR6833768_2.fastq


Ending Read Length


List files in scratch

total 4.6G
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 16:30 .
drwxrwxrwt. 15 root     root      4.0K Jun 24 16:33 ..
-rw-r--r--   1 varsha97 waxmanlab 2.3G Jun 24 16:27 SRR6833768_1.fastq
-rw-r--r--   1 varsha97 waxmanlab 2.3G Jun 24 16:30 SRR6833768_2.fastq
==========================================================
Finished on : Mon Jun 24 16:33:38 EDT 2019
0 hours, 10 minutes and 6 seconds elapsed.
==========================================================