-----------------------
Start of variable list:
-----------------------
Sample_ID:
IC57-1151
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE111828
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE111828/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 24 15:55:10 EDT 2019
Running on node : scc-kb5
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE111828/Scripts/03_Read_Length
Current job ID : 7056237
Current job name : Step_03_IC57-1151
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/7056237.1.linga

Loading required modules...


List files in scratch directory:

total 755M
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 15:58 .
drwxrwxrwt. 20 root     root      4.0K Jun 24 15:56 ..
-rw-r--r--   1 varsha97 waxmanlab 368M Jun 24 15:57 SRR6833754_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 388M Jun 24 16:00 SRR6833754_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing *.fastq


Ending Read Length


List files in scratch

total 755M
drwx------   2 varsha97 waxmanlab 4.0K Jun 24 16:01 .
drwxrwxrwt. 20 root     root      4.0K Jun 24 15:56 ..
-rw-r--r--   1 varsha97 waxmanlab 368M Jun 24 15:57 SRR6833754_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 388M Jun 24 16:00 SRR6833754_2.fastq.gz
==========================================================
Finished on : Mon Jun 24 16:06:07 EDT 2019
0 hours, 11 minutes and 13 seconds elapsed.
==========================================================