Left reads: Input : 12996465 Mapped : 12178124 (93.7% of input) of these: 1271015 (10.4%) have multiple alignments (99985 have >20) Right reads: Input : 12996465 Mapped : 10515232 (80.9% of input) of these: 1071821 (10.2%) have multiple alignments (99452 have >20) 87.3% overall read mapping rate. Aligned pairs: 10278553 of these: 1039030 (10.1%) have multiple alignments 331925 ( 3.2%) are discordant alignments 76.5% concordant pair alignment rate.