Left reads: Input : 17319478 Mapped : 16549493 (95.6% of input) of these: 1455569 ( 8.8%) have multiple alignments (101906 have >20) Right reads: Input : 17319478 Mapped : 15434547 (89.1% of input) of these: 1340334 ( 8.7%) have multiple alignments (101476 have >20) 92.3% overall read mapping rate. Aligned pairs: 15187003 of these: 1312263 ( 8.6%) have multiple alignments 332570 ( 2.2%) are discordant alignments 85.8% concordant pair alignment rate.