Left reads: Input : 16480172 Mapped : 15592831 (94.6% of input) of these: 2180467 (14.0%) have multiple alignments (265796 have >20) Right reads: Input : 16480172 Mapped : 13116475 (79.6% of input) of these: 1813916 (13.8%) have multiple alignments (264883 have >20) 87.1% overall read mapping rate. Aligned pairs: 12843146 of these: 1769113 (13.8%) have multiple alignments 366158 ( 2.9%) are discordant alignments 75.7% concordant pair alignment rate.