-----------------------
Start of variable list:
-----------------------
Sample_ID:
HJ-0001
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE101856
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE101856/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Jun 17 13:08:29 EDT 2019
Running on node : scc-kb4
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/varsha/GSE101856/Scripts/03_Read_Length
Current job ID : 6739928
Current job name : Step_03_HJ-0001
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/6739928.1.linga

Loading required modules...


List files in scratch directory:

total 3.4G
drwx------   2 varsha97 waxmanlab 4.0K Jun 17 13:09 .
drwxrwxrwt. 38 root     root      4.0K Jun 17 13:08 ..
-rw-r--r--   1 varsha97 waxmanlab 1.7G Jun 17 13:09 SRR5865511_1.fastq.gz
-rw-r--r--   1 varsha97 waxmanlab 1.8G Jun 17 13:10 SRR5865511_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR5865511_1.fastq


Processing SRR5865511_2.fastq


Ending Read Length


List files in scratch

total 21G
drwx------   2 varsha97 waxmanlab 4.0K Jun 17 13:14 .
drwxrwxrwt. 37 root     root      4.0K Jun 17 13:14 ..
-rw-r--r--   1 varsha97 waxmanlab  11G Jun 17 13:09 SRR5865511_1.fastq
-rw-r--r--   1 varsha97 waxmanlab  11G Jun 17 13:10 SRR5865511_2.fastq
==========================================================
Finished on : Mon Jun 17 13:19:37 EDT 2019
0 hours, 11 minutes and 8 seconds elapsed.
==========================================================