Left reads: Input : 58757698 Mapped : 50338349 (85.7% of input) of these: 4111063 ( 8.2%) have multiple alignments (99038 have >20) Right reads: Input : 58757698 Mapped : 47888443 (81.5% of input) of these: 3787869 ( 7.9%) have multiple alignments (97254 have >20) 83.6% overall read mapping rate. Aligned pairs: 42668034 of these: 3059305 ( 7.2%) have multiple alignments 3885356 ( 9.1%) are discordant alignments 66.0% concordant pair alignment rate.