Left reads: Input : 60661376 Mapped : 54586362 (90.0% of input) of these: 3938123 ( 7.2%) have multiple alignments (110259 have >20) Right reads: Input : 60661376 Mapped : 52772943 (87.0% of input) of these: 3736768 ( 7.1%) have multiple alignments (109314 have >20) 88.5% overall read mapping rate. Aligned pairs: 48911903 of these: 3230907 ( 6.6%) have multiple alignments 3993448 ( 8.2%) are discordant alignments 74.0% concordant pair alignment rate.