Left reads: Input : 59408720 Mapped : 54315730 (91.4% of input) of these: 3170215 ( 5.8%) have multiple alignments (135329 have >20) Right reads: Input : 59408720 Mapped : 52833471 (88.9% of input) of these: 3039896 ( 5.8%) have multiple alignments (134319 have >20) 90.2% overall read mapping rate. Aligned pairs: 49505598 of these: 2663256 ( 5.4%) have multiple alignments 3961430 ( 8.0%) are discordant alignments 76.7% concordant pair alignment rate.