-----------------------
Start of variable list:
-----------------------
Sample_ID:
H3-MAA100138-3_56_F-1-1
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Oct 12 20:49:24 EDT 2018
Running on node : scc-ka5
Current directory : /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/03_Read_Length
Current job ID : 8792468
Current job name : Step_03_H3-MAA100138-3_56_F-1-1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/8792468.1.linga

Loading required modules...


List files in scratch directory:

total 139M
drwx------   2 kkarri waxmanlab 4.0K Oct 12 20:49 .
drwxrwxrwt. 94 root   root      128K Oct 12 20:49 ..
-rw-r--r--   1 kkarri waxmanlab  67M Oct 12 20:49 SRR6575912_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab  73M Oct 12 20:49 SRR6575912_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6575912_1.fastq


Processing SRR6575912_2.fastq


Ending Read Length


List files in scratch

total 754M
drwx------   2 kkarri waxmanlab 4.0K Oct 12 20:49 .
drwxrwxrwt. 94 root   root      128K Oct 12 20:49 ..
-rw-r--r--   1 kkarri waxmanlab 377M Oct 12 20:49 SRR6575912_1.fastq
-rw-r--r--   1 kkarri waxmanlab 377M Oct 12 20:49 SRR6575912_2.fastq
==========================================================
Finished on : Fri Oct 12 20:49:39 EDT 2018
0 hours, 0 minutes and 15 seconds elapsed.
==========================================================