-----------------------
Start of variable list:
-----------------------
Sample_ID:
H8-MAA100041-3_9_M-1-1
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Oct 12 20:49:25 EDT 2018
Running on node : scc-kb6
Current directory : /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/03_Read_Length
Current job ID : 8792480
Current job name : Step_03_H8-MAA100041-3_9_M-1-1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/8792480.1.linga

Loading required modules...


List files in scratch directory:

total 42M
drwx------    2 kkarri waxmanlab 4.0K Oct 12 20:49 .
drwxrwxrwt. 107 root   root       84K Oct 12 20:49 ..
-rw-r--r--    1 kkarri waxmanlab  21M Oct 12 20:49 SRR6575507_1.fastq.gz
-rw-r--r--    1 kkarri waxmanlab  22M Oct 12 20:49 SRR6575507_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6575507_1.fastq


Processing SRR6575507_2.fastq


Ending Read Length


List files in scratch

total 230M
drwx------    2 kkarri waxmanlab 4.0K Oct 12 20:49 .
drwxrwxrwt. 107 root   root       84K Oct 12 20:49 ..
-rw-r--r--    1 kkarri waxmanlab 115M Oct 12 20:49 SRR6575507_1.fastq
-rw-r--r--    1 kkarri waxmanlab 115M Oct 12 20:49 SRR6575507_2.fastq
==========================================================
Finished on : Fri Oct 12 20:49:32 EDT 2018
0 hours, 0 minutes and 7 seconds elapsed.
==========================================================