-----------------------
Start of variable list:
-----------------------
Sample_ID:
H1-MAA100041-3_9_M-1-1
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Oct 12 20:48:07 EDT 2018
Running on node : scc-kb3
Current directory : /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/03_Read_Length
Current job ID : 8792455
Current job name : Step_03_H1-MAA100041-3_9_M-1-1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/8792455.1.linga

Loading required modules...


List files in scratch directory:

total 18M
drwx------   2 kkarri waxmanlab 4.0K Oct 12 20:48 .
drwxrwxrwt. 42 root   root      112K Oct 12 20:48 ..
-rw-r--r--   1 kkarri waxmanlab 8.8M Oct 12 20:48 SRR6575491_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 8.7M Oct 12 20:48 SRR6575491_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6575491_1.fastq


Processing SRR6575491_2.fastq


Ending Read Length


List files in scratch

total 114M
drwx------   2 kkarri waxmanlab 4.0K Oct 12 20:48 .
drwxrwxrwt. 42 root   root      112K Oct 12 20:48 ..
-rw-r--r--   1 kkarri waxmanlab  57M Oct 12 20:48 SRR6575491_1.fastq
-rw-r--r--   1 kkarri waxmanlab  57M Oct 12 20:48 SRR6575491_2.fastq
==========================================================
Finished on : Fri Oct 12 20:48:09 EDT 2018
0 hours, 0 minutes and 2 seconds elapsed.
==========================================================